An abstract implementation of ILocation.

Abstract ILocation decorator (wrapper).

an abstract class implementing basic functionality of a translation table that translates Symbols from one Alphabet to another.

Base class for simple contiguous Location implementations.

An abstract class implementing basic functionality of a translation table that translates ISymbols from one Alphabet to another.

The base-class for Symbol implementations.

Abstract helper implementation of the SymbolList core interface.

This adapter screens all edit events to see if they overlap with a window of interest. If they do, then a new edit event is built for the overlapping region and pased on to all listeners.

This translates edit events that fall within a window into window co-ordinates.

An abstract class implementing basic functionality of a translation table that translates ISymbols from one IAlphabet to another.

The static bits of IAlphabet.

Encapsulates an edit operation on a SymbolList.

The exception to indicate that an invalid alphabet has been used.

The exception to indicate that a symbol is not valid within a context.

Static bits for the ILocation interface.

Tools class containing a number of operators for working with Location objects.

contains utility methods for sequence motifs.

A simple implementation of Location that contains all points between Min and Max inclusive.

A genetic code translation table representing a translation table in the DDBJ/EMBL/GenBank Feature Table (appendix V).

A no-frills implementation of a translation table that maps between two alphabets. The mapping can be either one-to-one or many-to-one.

Basic implementation of SymbolList.

An alphabet that contains a single atomic symbol.

The static bits of ISymbolList.

Names of translation tables.

An alignment containing multiple ISymbolLists.

The set of AtomicSymbols which can be concatenated together to make a ISymbolList.

A symbol that can be represented as a string of Symbols.

A set of integers, often used to represent positions on biological sequences.

A translation table that will handle the many-to-one mappings that you see, for example, with genetic codes.

A translation table that can also translate from the target to source alphabet.

A single symbol.

A sequence of symbols that belong to an alphabet.

Encapsulates the mapping from a source to a destination alphabet.