[Missing <summary> documentation for N:BioSharp.Core.Bio.Seq]
Classes
Class | Description | |
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AbstractFeatureHolder |
An abstract implementation of FeatureHolder.
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CircularView |
A circular view onto another Sequence object.
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DNATools |
Useful functionality for processing DNA sequences.
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Feature |
A feature within a sequence, or nested within another feature.
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Feature..::.Template |
Template class for a plain feature.
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FeatureFilter |
The static bits of the feature filter interface.
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FeatureFilter..::.ByAncestor |
Filter by applying a nested FeatureFilter to all
ancestor features. Returns true if at least one
of them matches the filter. Always false if the
parent is not a feature (e.g. top-level features, where the
parent is a sequence).
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FeatureFilter..::.ByParent |
Filter by applying a nested FeatureFilter to the
parent feature. Always false if the parent
is not a feature (e.g. top-level features, where the
parent is a sequence).
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FeatureHolder |
The interface for objects that contain features.
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FramedFeature |
The static bits of IFramedFeature.
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FramedFeature..::.Template |
A template for a framed feature.
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MergeFeatureHolder |
FeatureHolder which exposes all the features in a set of sub-FeatureHolders.
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ProteinTools | ||
RemoteFeature |
The static bits of IRemoteFeature.
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RemoteFeature..::.Template |
A template for a remote feature.
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RNATools | ||
SequenceTools |
Methods for manipulating sequences.
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SimpleFeatureHolder |
A no-frills implementation of FeatureHolder.
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SimpleFeatureRealizer |
FeatureRealizer which uses a lookup table to map template classes
to implementations. Optionally, this implementation can fall back
on another FeatureRealizer if it fails.
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StrandedFeature |
Adds the concept of 'strand' to features.
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StrandedFeature..::.Strand |
Class to represent the 'strandedness' of a feature.
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StrandedFeature..::.Template |
Template class for parameterizing the creation of a new StrandedFeature.
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Interfaces
Interface | Description | |
---|---|---|
IFeature |
A feature within a sequence, or nested within another feature.
| |
IFeatureFilter |
A filter for accepting or rejecting a feature.
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IFeatureHolder |
The interface for objects that contain features.
| |
IFeatureRealizer |
Interface for translators which map from Feature.Template
instances to real Feature objects. Note:
this interface is intended for use primarily by Sequence
implementors. Normal users can generally ignore it. | |
IFrame |
An interface that can be implemented by classes that contain frame information.
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IFramedFeature |
A feature that includes the concept of frame by extending stranded.
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IOptimizableFilter |
The interface for filters that can potentialy optimize themselves, and
compare themselves with other filters.
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IRealizingFeatureHolder |
Interface for FeatureHolder objects which know how to instantiate new child Features.
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IRemoteFeature |
A feature that indicates that there is some remote feature that can't be
represented entirely on a single Sequence.
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ISequence |
A biological sequence.
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ISequenceAnnotator |
An object which adds some additional information to a Sequence.
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ISequenceFactory | Obsolete.
The interface for objects that will manufacture sequences.
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IStrandedFeature |
Adds the concept of 'strand' to features.
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IUp |
An up filter.
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